6.14. NAMDBIN files format — MDAnalysis.coordinates.NAMDBIN¶
Read/Write coordinates in NAMD double-precision binary format (suffix “coor” or “namdbin”).
6.14.1. Classes¶
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class
MDAnalysis.coordinates.NAMDBIN.NAMDBINReader(filename, convert_units=True, n_atoms=None, **kwargs)[source]¶ Reader for NAMD binary coordinate files.
New in version 1.0.0.
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Writer(filename, **kwargs)[source]¶ Returns a NAMDBINWriter for filename.
- Parameters
filename (str) – filename of the output NAMDBIN file
- Returns
- Return type
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static
parse_n_atoms(filename, **kwargs)[source]¶ Read the coordinate file and deduce the number of atoms
- Returns
n_atoms – the number of atoms in the coordinate file
- Return type
- Raises
NotImplementedError – when the number of atoms can’t be deduced
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class
MDAnalysis.coordinates.NAMDBIN.NAMDBINWriter(filename, n_atoms=None, **kwargs)[source]¶ Writer for NAMD binary coordinate files.
New in version 1.0.0.
- Parameters
filename (str or
NamedStream) – name of the output file or a streamn_atoms (int) – number of atoms for the output coordinate